Jose Diaz-Gonzalez 3ae9feba8f
fix: keep the git directory for worktree-enabled installations ...
Git worktrees do not include the full .git directory - only a pointer to the actual directory - when keep-git-dir is set to true, which is incorrect for built containers. This change special-cases that combination, allowing folks on newer git installs to actually keep the .git directory during the build process.
Closes #4415
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